Protein structure networks

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Protein structure networks.

The application of the field of network science to the scientific disciplines of structural biology and biochemistry, have yielded important new insights into the nature and determinants of protein structures, function, dynamics and the folding process. Advancements in further understanding protein relationships through network science have also reshaped the way we view the connectivity of prot...

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Prediction of Protein Sub-Mitochondria Locations Using Protein Interaction Networks

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Protein Secondary Structure Modelling with Probabilistic Networks

In this paper we study the performance of probabilistic networks in the context of protein sequence analysis in molecular biology. Speci cally, we report the results of our initial experiments applying this framework to the problem of protein secondary structure prediction. One of the main advantages of the probabilistic approach we describe here is our ability to perform detailed experiments w...

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Protein Secondary-Structure Modeling with Probabilistic Networks

In this paper we study the performance of probabilistic networks in the context of protein sequence analysis in molecular biology. Specifically, we report the results of our initial experiments applying this framework to the problem of protein secondary structure prediction. One of the main advantages of the probabilistic approach we describe here is our ability to perform detailed experiments ...

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Optimized Null Model for Protein Structure Networks

Much attention has recently been given to the statistical significance of topological features observed in biological networks. Here, we consider residue interaction graphs (RIGs) as network representations of protein structures with residues as nodes and inter-residue interactions as edges. Degree-preserving randomized models have been widely used for this purpose in biomolecular networks. How...

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ژورنال

عنوان ژورنال: Briefings in Functional Genomics

سال: 2012

ISSN: 2041-2649,2041-2657

DOI: 10.1093/bfgp/els039